DRAFT

How to prepare FLEXPART input data?

How to run FLEXPART?

To run a FLEXPART simulation you need to use the FLEXPART Run icon.The simulation itself requires:

input meteorological fields
These can be generated for FLEXPART using the FLEXPART Prepare icon or with an external application.
the FLEXPART executable
At ECMWF it is centrally installed and does not need to be specified for FLEXPART Run. For a custom-build executable or at other sites please follow the instructions in FLEXPART setup.
some FLEXPART resources
FLEXPART needs a set of files to carry out a simulation: IGBP_int1.dat, OH_7lev_agl.dat, surfdata.t, surfdepo.t. At ECMWF these are centrally installed and do not need to be specified for FLEXPART Run. At other sites please follow the instructions here.
setting the SPECIES to be released
The species we can use in a FLEXPART simulation must be defined by a set of ASCII files. See details about their usage here.
specifying the releases
defining the run conditions
the path to the output files
Metview runs FLEXPART in a temporary folder then converts the results and copies them into this folder. FLEXPART outputs can be large so take it into account when selecting this path.

How to specify the FLEXPART executable?

How to define the SPECIES?

The species (chemical elements) released during a simulation are specified as integer numbers in the Release Species parameter in FLEXPART Run. The integer ID of the individual species are taken from the name of the species definition files.These have to be located in the directory defined

via the User Species Path parameter in FLEXPART Run
or if it is left blank (this is the default value) Metview will use the MV_FLEXPART_SPECIES environment variable.

The species distributed with FLEXPART

Folder option/SPECIES in the FLEXPART distribution contains a default set of species definitions. Here each species is represented by a file called SPECIES_NNN , where NNN is the integer ID of the given species.The table below summarises what species are available:

File	Description	File	Description	File	Description
SPECIES_001	TRACER	SPECIES_011	NH3	SPECIES_021	Xe-133
SPECIES_002	O3	SPECIES_012	SO4-areo	SPECIES_022:	CO
SPECIES_003	NO	SPECIES_013	SO4-areo	SPECIES_024	AIRTRACER
SPECIES_004	NO2	SPECIES_014	I2-13	SPECIES_025	AERO-TRACER
SPECIES_005	HNO3	SPECIES_015	I-131
SPECIES_006	HNO2	SPECIES_016	Cs-137
SPECIES_007	H2O2	SPECIES_017	Y-91
SPECIES_008	SO2	SPECIES_018	Ru-106
SPECIES_009	HCHO	SPECIES_019	Kr-85
SPECIES_010	PAN	SPECIES_020	Sr-90

At ECMWF

The species are located in the directory specified by environment variable MV_FLEXPART_SPECIES. The contents of this directory is the same as that of folder option/SPECIES in the FLEXPART distribution.

At other sites

Instructions to setup the species path can be found here.

Using your own definitions

If you want create your own species definition you need make a copy of this directory and add your own species to it. Then set the path in User Species Path so that FLEXPART could pick up your definitions.

How to define the releases?

A release is defined with the FLEXPART Release icon. In our example the release is defined with iconshappens at a point between 1651 and 9000 m. The emitted mass is 100 kg.

The macro code,

rel_volcano = flexpart_release(
	name			:	"REL 1", 
	starting_date	:	0,
	starting_time	:	15,
	ending_date		:	2,
	ending_time		:	12,
	area			:	[63.63,-19.6,63.63,-19.6],
	top_level		:	9000,
	bottom_level	:	1651,
	particle_count	:	10000,
	masses			:	100
	)

The location of the FLEXPART executable and that of some other files/directories have to be specified for Metview. These locations can be defined either through a set of Metview environment variables or via parameters in the FLEXPART Run icon (these latter take precedence). The table below summarises what actually is needed to set for Metview.

The FLEXPART executable

Need to be built from FLEXPART source

MV_FLEXPART_EXE_PATH

User Exe Path

The directory containing the following files:

IGBP_int1.dat
OH_7lev_agl.dat
surfdata.t
surfdepo.t

These files are distributed in the FLEXPART source inside folder option

MV_FLEXPART_RESOURCES_PATH

User Resources Path

The directory containing the species

A set of species are distributed in the FLEXPART source inside folder option/SPECIES

MV_FLEXPART_SPECIES_PATH

User Species Path

A case study

In this case study will run FLEXPART for an Icelandic volcano eruption happened in 2012.

Preparations

First start Metview; at ECMWF, the command to use is metview (see Metview at ECMWF for details of Metview versions). You should see the main Metview desktop popping up.

You will create some icons yourself, but some are supplied for you - please download the following file:

flextra_tutorial.tar.gz

and save it in your $HOME/metview directory. You should see it appear on your main Metview desktop, from where you can right-click on it, then choose execute to extract the files.

Alternatively, if at ECMWF then you can copy it like this from the command line:
cp -R /home/graphics/cgx/tutorials/flexpart_tutorial ~/metview

You should now (after a few seconds) see a flexta_tutorial folder. You will work in this folder so open it up.

The input data

The input data is already prepared for you and is located in folder Data. The FLEXPART Prepare icon and its Macro equivalent can be found in the Prepare folder.

Run a forward simulation

The fwd_conc FLEXPART Run icon defines the forward simulation. It requires the release description that we define with the vol_release icon. The macro geas like this:

The macro code,

rel_volcano = flexpart_release(
	name			:	"REL 1", 
	starting_date	:	0,
	starting_time	:	15,
	ending_date		:	2,
	ending_time		:	12,
	area			:	[63.63,-19.6,63.63,-19.6],
	top_level		:	9000,
	bottom_level	:	1651,
	particle_count	:	10000,
	masses			:	100
	)

#Run flexpart (asynchronous call!)

r = flexpart_run(
	output_path	:	"result_fwd_conc",
	input_path	:	"../data",
	starting_date	:	20120517,
	starting_time	:	12,
	ending_date	:	20120519,
	ending_time	:	12,
	output_flux	:	"on",
	output_trajectory	:	"on",
	output_area	:	[40,-25,66,10],
	output_grid	:	[0.5,0.5],
	output_levels	:	[500,1000,2000,3000,4000,5000,7500,10000,15000],
	release_species	:	8,
	receptors	:	"on",
	receptor_names	:	["rec1","rec2"],
	receptor_latitudes	:	[60,56.9],
	receptor_longitudes	:	[6.43,-3.5],
	releases	:	rel_volcano
	)

Forward simultaions

Fields

Trajecories

receprotros

volume fill

fluxes

cross section

time-height diagram

total column

age class

backward simulation

residence time

fluxes

trajecory