...
We will now explore the different options when it comes to storing your data.
Table of Contents |
---|
Main filesystems
Connect to Atos HPCF or ECS main login node. What is your default filesystem? Can you try 4 different ways to accessing that space?
Expand title Answer The default directory is your HOME directory, which is /home/$USER. It is a dedicated personal space for you, and you can always come back to that with either of the following commands:
No Format cd cd ~ cd $HOME cd /home/$USER
Your HOME directory is accessible across all Atos HPCF, ECS, VDI and EcFlow services.
There are 3 more main storage spaces. Create an empty file called
del.me
on each one of them. Then, check that they have been created withls
, and then remove them withrm
.Expand title Answer Besides HOME, you also have also access to PERM, HPCPERM and SCRATCH. Like HOME, they are all dedicated personal spaces with their corresponding environment variable. Using those environment variables over hardcoded paths is strongly recommended.
You can use touch to create the test files:
No Format touch $PERM/del.me touch $HPCPERM/del.me touch $SCRATCH/del.me
Check they exist with:
No Format ls -l $PERM/del.me ls -l $HPCPERM/del.me ls -l $SCRATCH/del.me
Remove them with:
No Format rm $PERM/del.me rm $HPCPERM/del.me rm $SCRATCH/del.me
How much space have you used in each of your main 4 filesystems? How much can you store?
Expand title Answer All the filesystems have quotas enforced. You can check them with the quota command
No Format quota
For
HOME
andPERM
, the snippet should look similar to:No Format Quota for $HOME: home_b user 1234 <space used> <space limit> <number of files stored> - * Quota for $PERM POSIX User 1234 <space used> <space limit> <number of files stored> none
For
SCRATCH
andHPCPERM
the format is slightly different:No Format Project quota for $SCRATCH and $SCRATCHDIR: Disk quotas for prj 1000001798 (pid 1000001798): Filesystem used quota limit grace files quota limit grace /ec/res4 XXX YYY YYY - ZZZ WWW WWW - Project quota for $HPCPERM: Disk quotas for prj 2000001798 (pid 2000001798): Filesystem used quota limit grace files quota limit grace /ec/res4 XXX YYY YYY - ZZZ WWW WWW -
If you are on the VDI, open a new terminal there. Can you access your
HOME
,PERM,
SCRATCH
andHPCPERM
?Expand title Answer HOME and PERM
are NFS-based Filesystems, which are mounted on all user computing platforms at ECMWF. You may access them with$HOME
and$PERM
environment variables:No Format ls $HOME ls $PERM
However,
SCRATCH
andHPCPERM
are Lustre Based filesystem only available on the Atos HPCF, so they are not available on other computing platforms such as VDI or ecFlow VMs and the corresponding environment variables are therefore not defined.EXTRA: For long term archival purposes, most users may also use ECFS. Files will be stored in ECMWF's Data Handling System on Tape. Create a small text file and copy it to your ECFS space, then ensure it is there, retrieve it and remove it.
Expand title Solution No Format echo "hello world" > test_file.txt ecp test_file.txt ec: els -l ec:test_file.txt ecp ec:test_file.txt retrieved_test_file.txt diff test_file.txt retrieved_test_file.txt erm ec:test_file.txt
...